Landolt-Börnstein - Group VII Biophysics
Volume 1C 1990

Nucleic Acids · Spectroscopic and Kinetic Data. Physical Data I

Editors: W. Saenger
ISBN: 978-3-540-19428-6 (Print) 978-3-540-31386-1 (Online)
DOI: 10.1007/b34251

Table of contents (104 documents)

  1. Online Document 1

    Spectroscopic and Kinetic Data. Physical Data I · 3.1.2 Methods

    W. C. Johnson

  2. Online Document 2

    3.1.3 Comments on the CD data

    W. C. Johnson

  3. Online Document 3

    3.1.4.1 CD spectra for nucleic acid monomers

    W. C. Johnson

  4. Online Document 4

    3.1.4.2 CD spectra for dinucleotides

    W. C. Johnson

  5. Online Document 5

    3.1.4.3 CD spectra for homopolynucleotides

    W. C. Johnson

  6. Online Document 6

    3.1.4.4 CD spectra for other synthetic polynucleotides

    W. C. Johnson

  7. Online Document 7

    3.1.4.5 CD spectra for natural nucleic acids

    W. C. Johnson

  8. Online Document 8

    3.1.5 References for 3.1

    W. C. Johnson

  9. Online Document 9

    3.2.1.3 Data presentation

    W. Guschlbauer

  10. Online Document 10

    3.2.1.4 List of constituents of nucleotides

    W. Guschlbauer

  11. Online Document 11

    3.2.2.1 Melting temperatures of polydeoxyribonucleotide hetero-complexes

    W. Guschlbauer

  12. Online Document 12

    3.2.2.2 Melting temperatures of polyribonucleotide hetero-complexes

    W. Guschlbauer

  13. Online Document 13

    3.2.2.3 Melting temperatures of hybrid hetero-complexes

    W. Guschlbauer

  14. Online Document 14

    3.2.2.4 Melting temperatures of homo-complexes

    W. Guschlbauer

  15. Online Document 15

    3.2.2.5 pK values of homo-complexes

    W. Guschlbauer

  16. Online Document 16

    3.2.3 References for 3.2

    W. Guschlbauer

  17. Online Document 17

    3.3.2 The theory of the relation between vibrational frequencies and conformation

    W. L. Peticolas

  18. Online Document 18

    3.3.4 Characterization of experimentally induced changes in DNA conformation by Raman spectroscopy

    W. L. Peticolas

  19. Online Document 19

    3.3.5 The use of Raman spectroscopy to solve the conformational code of DNA

    W. L. Peticolas

  20. Online Document 20

    3.3.8 The characterization of the conformations of nucleic acids using infrared spectroscopy

    W. L. Peticolas

  21. Online Document 21

    3.3.9 Data on Raman spectroscopy of nucleic acids

    W. L. Peticolas

  22. Online Document 22

    Spectroscopic and Kinetic Data. Physical Data I · Figures for 3.3

    W. L. Peticolas

  23. Online Document 23

    3.3.10 References for 3.3

    W. L. Peticolas

  24. Online Document 24

    3.4.2 Proton NMR spectroscopy of oligomers

    C. Altona

  25. Online Document 25

    3.4.3 Structure and conformations of oligomers

    C. Altona

  26. Online Document 26

    3.4.4 Organization of the oligonucleotide H-1 NMR tables

    C. Altona

  27. Online Document 27

    3.4.5.1 Coupling constants of RNA sequences

    C. Altona

  28. Online Document 28

    Spectroscopic and Kinetic Data. Physical Data I · Tables 22 - 53

    C. Altona

  29. Online Document 29

    Spectroscopic and Kinetic Data. Physical Data I · Tables 54 - 78

    C. Altona

  30. Online Document 30

    3.4.5.3 Coupling constants of DNA sequences and RNA-DNA hybrids

    C. Altona

  31. Online Document 31

    Spectroscopic and Kinetic Data. Physical Data I · Tables 116 - 156

    C. Altona

  32. Online Document 32

    Spectroscopic and Kinetic Data. Physical Data I · Tables 157 - 184

    C. Altona

  33. Online Document 33

    Spectroscopic and Kinetic Data. Physical Data I · Tables 185 - 205

    C. Altona

  34. Online Document 34

    3.4.6 References for 3.4

    C. Altona

  35. Online Document 35

    3.5.1 Introduction

    C. W. Hilbers, J. A. L. I. Walters

  36. Online Document 36

    3.5.2 Data on H-1, C-13 and N-15 nuclei resonances in tRNAs

    C. W. Hilbers, J. A. L. I. Walters

  37. Online Document 37

    3.5.3 References for 3.5

    C. W. Hilbers, J. A. L. I. Walters

  38. Online Document 38

    Spectroscopic and Kinetic Data. Physical Data I · 3.6.2 Methods

    D. H. Turner, N. Sugimoto, S. M. Freier

  39. Online Document 39

    3.6.3 Arrangement of data

    D. H. Turner, N. Sugimoto, S. M. Freier

  40. Online Document 40

    3.6.4 List of symbols and abbreviations

    D. H. Turner, N. Sugimoto, S. M. Freier

  41. Online Document 41

    3.6.5.1 Thermodynamic parameters for duplex formation by RNA oligonucleotides

    D. H. Turner, N. Sugimoto, S. M. Freier

  42. Online Document 42

    3.6.5.2 Thermodynamic parameters for oligonucleotides with loops

    D. H. Turner, N. Sugimoto, S. M. Freier

  43. Online Document 43

    3.6.5.4 Thermodynamic parameters for duplex formation by DNA oligonucleotides

    D. H. Turner, N. Sugimoto, S. M. Freier

  44. Online Document 44

    3.6.5.5 Thermodynamic parameters for duplex formation by DNA oligonucleotides containing mismatches

    D. H. Turner, N. Sugimoto, S. M. Freier

  45. Online Document 45

    3.6.5.6 Thermodynamic parameters for helix initiation and propagation in 1 M NaCl.

    D. H. Turner, N. Sugimoto, S. M. Freier

  46. Online Document 46

    3.6.5.8 Free energy increments for internal G:U pairs in RNA oligonucleotides

    D. H. Turner, N. Sugimoto, S. M. Freier

  47. Online Document 47

    3.6.5.9 Free energy parameters for RNA helix termini

    D. H. Turner, N. Sugimoto, S. M. Freier

  48. Online Document 48

    3.6.5.10 Free energy increments for loops

    D. H. Turner, N. Sugimoto, S. M. Freier

  49. Online Document 49

    3.6.5.11 Thermodynamic parameters for single mismatches in DNA oligonucleotides

    D. H. Turner, N. Sugimoto, S. M. Freier

  50. Online Document 50

    3.6.5.12 Kinetic parameters for double helix formation by oligonucleotides

    D. H. Turner, N. Sugimoto, S. M. Freier

  51. Online Document 51

    3.6.5.13 Kinetics of hairpin loop formation by oligomers

    D. H. Turner, N. Sugimoto, S. M. Freier

  52. Online Document 52

    3.6.5.14 Kinetic parameters for binding between tRNA and oligonucleotides

    D. H. Turner, N. Sugimoto, S. M. Freier

  53. Online Document 53

    3.6.5.15 Kinetics of tRNA associations through complementary anticodons

    D. H. Turner, N. Sugimoto, S. M. Freier

  54. Online Document 54

    3.6.5.16 Kinetics of double helix formation for polynucleotides

    D. H. Turner, N. Sugimoto, S. M. Freier

  55. Online Document 55

    3.6.5.17 Kinetic parameters for intramolecular conformational changes in RNA

    D. H. Turner, N. Sugimoto, S. M. Freier

  56. Online Document 56

    3.6.5.18 Kinetic parameters for stacking in single strands

    D. H. Turner, N. Sugimoto, S. M. Freier

  57. Online Document 57

    3.6.6 References for 3.6

    D. H. Turner, N. Sugimoto, S. M. Freier

  58. Online Document 58

    4.1.1 Introduction

    M. D. Frank-Kamenetskii

  59. Online Document 59

    4.1.2 Bending and torsional rigidity of double helices

    M. D. Frank-Kamenetskii

  60. Online Document 60

    4.1.3 Energetics of the helix-coil transition

    M. D. Frank-Kamenetskii

  61. Online Document 61

    4.1.4 Energetics of the B-Z transition

    M. D. Frank-Kamenetskii

  62. Online Document 62

    4.1.5 References for 4.1

    M. D. Frank-Kamenetskii

  63. Online Document 63

    4.2.1 Introduction

    H. H. Klump

  64. Online Document 64

    4.2.2.1 Conformational transitions in helical polynucleotides

    H. H. Klump

  65. Online Document 65

    4.2.2.2 Property diagrams of all double helical polynucleotides

    H. H. Klump

  66. Online Document 66

    4.2.2.3 Energetics of helix/helix transitions

    H. H. Klump

  67. Online Document 67

    4.2.2.4 Thermodynamics of RNA single-strand unfolding

    H. H. Klump

  68. Online Document 68

    4.2.2.5 Molecular forces that stabilize DNA sequences

    H. H. Klump

  69. Online Document 69

    4.2.3 References for 4.2

    H. H. Klump

  70. Online Document 70

    4.3.1 Introduction

    H. Eisenberg

  71. Online Document 71

    4.3.2.1 Ultracentrifugation, partial volumes and interaction parameters

    H. Eisenberg

  72. Online Document 72

    4.3.2.2 Total intensity light scattering

    H. Eisenberg

  73. Online Document 73

    4.3.2.3 Small angle X-ray and neutron scattering

    H. Eisenberg

  74. Online Document 74

    4.3.2.4 Viscometry

    H. Eisenberg

  75. Online Document 75

    4.3.3 The persistent chain

    H. Eisenberg

  76. Online Document 76

    4.3.4.2 Hydration of DNA

    H. Eisenberg

  77. Online Document 77

    4.3.4.3 Molecular parameters of aqueous solutions of linear X-DNA (X = Na, Cs, Li, Rb)

    H. Eisenberg

  78. Online Document 78

    4.3.4.4 Calculated neutron scattering length increments for linear CsDNA

    H. Eisenberg

  79. Online Document 79

    4.3.4.5 Molecular parameters of linear ColE 1 DNA

    H. Eisenberg

  80. Online Document 80

    4.3.4.6 Physical chemical properties of ColE 1-plasmid DNA in solution

    H. Eisenberg

  81. Online Document 81

    4.3.4.8 Persistence length and excluded volume parameters for high molar mass linear T7 DNA

    H. Eisenberg

  82. Online Document 82

    4.3.5 References for 4.3

    H. Eisenberg

  83. Online Document 83

    4.4.1 Introduction

    J. J. Butzow, G. L. Eichhorn, Y. A. Shin

  84. Online Document 84

    4.4.2.1.1 Association constants

    J. J. Butzow, G. L. Eichhorn, Y. A. Shin

  85. Online Document 85

    4.4.2.1.2 Binding characteristics

    J. J. Butzow, G. L. Eichhorn, Y. A. Shin

  86. Online Document 86

    Metal ions Li(I) - Cs(I)

    J. J. Butzow, G. L. Eichhorn, Y. A. Shin

  87. Online Document 87

    Metal ions Cs(I) - U(IV)

    J. J. Butzow, G. L. Eichhorn, Y. A. Shin

  88. Online Document 88

    4.4.2.2.2 Transition between right- and left-handed helix

    J. J. Butzow, G. L. Eichhorn, Y. A. Shin

  89. Online Document 89

    4.4.2.2.3 Other conformational changes: secondary (except right-left handed), tertiary, quaternary structures

    J. J. Butzow, G. L. Eichhorn, Y. A. Shin

  90. Online Document 90

    4.4.2.2.4 Hydrodynamic property changes

    J. J. Butzow, G. L. Eichhorn, Y. A. Shin

  91. Online Document 91

    4.4.3.1.1 Types of metal ion binding sites in tRNAs

    J. J. Butzow, G. L. Eichhorn, Y. A. Shin

  92. Online Document 92

    Metal ions Mg(II) - Cu(II) in tRNS

    J. J. Butzow, G. L. Eichhorn, Y. A. Shin

  93. Online Document 93

    Metal ions Zn(II) - Cs(I) in tRNS

    J. J. Butzow, G. L. Eichhorn, Y. A. Shin

  94. Online Document 94

    RNS other than tRNS

    J. J. Butzow, G. L. Eichhorn, Y. A. Shin

  95. Online Document 95

    4.4.3.1.3 Association constants for metal ion-tRNA interactions

    J. J. Butzow, G. L. Eichhorn, Y. A. Shin

  96. Online Document 96

    4.4.3.2.1 Effects on secondary structure

    J. J. Butzow, G. L. Eichhorn, Y. A. Shin

  97. Online Document 97

    4.4.3.2.2 Effects on tertiary structures

    J. J. Butzow, G. L. Eichhorn, Y. A. Shin

  98. Online Document 98

    4.4.3.2.3 Thermal melting effects - tRNAs

    J. J. Butzow, G. L. Eichhorn, Y. A. Shin

  99. Online Document 99

    Order of reactivity

    J. J. Butzow, G. L. Eichhorn, Y. A. Shin

  100. Online Document 100

    Degradation rate: Mg(II) - La(III)

    J. J. Butzow, G. L. Eichhorn, Y. A. Shin

  101. Online Document 101

    Degradation rate: Ce(III) - Bi(III)

    J. J. Butzow, G. L. Eichhorn, Y. A. Shin

  102. Online Document 102

    4.4.5 Data on metal ion catalyzed degradation of DNAs and polydeoxynucleotides

    J. J. Butzow, G. L. Eichhorn, Y. A. Shin

  103. Online Document 103

    Spectroscopic and Kinetic Data. Physical Data I · Figures for 4.4

    J. J. Butzow, G. L. Eichhorn, Y. A. Shin

  104. Online Document 104

    4.4.6 References for 4.4

    J. J. Butzow, G. L. Eichhorn, Y. A. Shin