Landolt-Börnstein - Group VII Biophysics
Volume 1D 1990

Nucleic Acids · Physical Data II. Theoretical Investigations

Editors: W. Saenger
ISBN: 978-3-540-52454-0 (Print) 978-3-540-31387-8 (Online)
DOI: 10.1007/b40214

Table of contents (105 documents)

  1. Online Document 1

    4.5.1 Introduction and definition of terms

    W. R. Bauer

  2. Online Document 2

    4.5.2 Determination of superhelix density

    W. R. Bauer

  3. Online Document 3

    4.5.3 Sedimentation properties of closed circular DNA

    W. R. Bauer

  4. Online Document 4

    4.5.4 Gel electrophoresis of closed circular DNA

    W. R. Bauer

  5. Online Document 5

    4.5.5 Energy parameters for closed circular DNA

    W. R. Bauer

  6. Online Document 6

    4.5.6 Ligand binding to closed circular DNA

    W. R. Bauer

  7. Online Document 7

    4.5.7 Helix-coil transitions

    W. R. Bauer

  8. Online Document 8

    4.5.8 Local structural transitions

    W. R. Bauer

  9. Online Document 9

    4.5.9 References for 4.5

    W. R. Bauer

  10. Online Document 10

    4.6.1 Introduction

    D. Riesner

  11. Online Document 11

    Physical Data II. Theoretical Investigations · 4.6.2 Techniques

    D. Riesner

  12. Online Document 12

    4.6.3.1 Oligonucleotides

    D. Riesner

  13. Online Document 13

    4.6.3.2 Natural RNA and polyribonucleotides

    D. Riesner

  14. Online Document 14

    4.6.3.3 DNA restriction fragments

    D. Riesner

  15. Online Document 15

    4.6.3.4 Plasmids and phages

    D. Riesner

  16. Online Document 16

    4.6.3.5 RNA transcripts, RNA-DNA hybrids, single-stranded (ss) and double-stranded (ds) DNA

    D. Riesner

  17. Online Document 17

    4.6.3.6 Pre-purification and recovery of nucleic acids

    D. Riesner

  18. Online Document 18

    4.6.4 References for 4.6

    D. Riesner

  19. Online Document 19

    4.7.1 Introduction

    C. Zimmer, U. Wähnert

  20. Online Document 20

    Physical Data II. Theoretical Investigations · Ligands 1 - 22

    Chr. Zimmer, U. Wähnert

  21. Online Document 21

    Physical Data II. Theoretical Investigations · Ligands 23 - 55

    Chr. Zimmer, U. Wähnert

  22. Online Document 22

    4.7.2.2.1 Absorption data

    Chr. Zimmer, U. Wähnert

  23. Online Document 23

    4.7.2.2.2 Thermal melting

    Chr. Zimmer, U. Wähnert

  24. Online Document 24

    4.7.2.2.3 Fluorescence

    Chr. Zimmer, U. Wähnert

  25. Online Document 25

    4.7.2.2.4 Circular dichroism

    Chr. Zimmer, U. Wähnert

  26. Online Document 26

    4.7.2.3 Nuclear magnetic resonance

    Chr. Zimmer, U. Wähnert

  27. Online Document 27

    Physical Data II. Theoretical Investigations · Tables 8 - 19

    Chr. Zimmer, U. Wähnert

  28. Online Document 28

    Physical Data II. Theoretical Investigations · Figs. 121 - 172

    Chr. Zimmer, U. Wähnert

  29. Online Document 29

    Physical Data II. Theoretical Investigations · Table 20

    Chr. Zimmer, U. Wähnert

  30. Online Document 30

    Physical Data II. Theoretical Investigations · Tables 21 - 30

    Chr. Zimmer, U. Wähnert

  31. Online Document 31

    Physical Data II. Theoretical Investigations · Figs. 173 - 208

    Chr. Zimmer, U. Wähnert

  32. Online Document 32

    4.7.2.6 Thermodynamics, kinetics and theoretical computations

    Chr. Zimmer, U. Wähnert

  33. Online Document 33

    4.7.3 References for 4.7

    Chr. Zimmer, U. Wähnert

  34. Online Document 34

    4.8.1 Introduction

    D. Riesner, G. Steger

  35. Online Document 35

    4.8.2 Sequences and homologies

    D. Riesner, G. Steger

  36. Online Document 36

    4.8.3 Size and shape in solution

    D. Riesner, G. Steger

  37. Online Document 37

    4.8.4 Calculation of secondary structures and their transitions

    D. Riesner, G. Steger

  38. Online Document 38

    4.8.5 Thermodynamic experiments

    D. Riesner, G. Steger

  39. Online Document 39

    4.8.6 Kinetic data of conformational transitions of viroids

    D. Riesner, G. Steger

  40. Online Document 40

    4.8.7 Ligand binding

    D. Riesner, G. Steger

  41. Online Document 41

    4.8.8 References for 4.8

    D. Riesner, G. Steger

  42. Online Document 42

    4.9.1 Introduction

    S. C. Kowalczykowski

  43. Online Document 43

    4.9.2 Thermodynamic formalism and experimental methods

    S. C. Kowalczykowski

  44. Online Document 44

    4.9.3 Protein-nucleic acid binding parameters

    S. C. Kowalczykowski

  45. Online Document 45

    4.9.4 References for 4.9

    S. C. Kowalczykowski

  46. Online Document 46

    4.10.1 Introduction

    D. Porschke

  47. Online Document 47

    4.10.2.1 Interactions in non-aqueous solvents

    D. Porschke

  48. Online Document 48

    4.10.2.2 Interactions of monomer residues in aqueous solution

    D. Porschke

  49. Online Document 49

    4.10.2.3 Interactions of peptides containing basic amino acids with nucleic acids

    D. Porschke

  50. Online Document 50

    4.10.2.4 Interactions of amino acids and peptides of mixed sequence with polynucleotides

    D. Porschke

  51. Online Document 51

    4.10.2.5 Enthalpy- and entropy-changes from calorimetric and van’t Hoff analysis

    D. Porschke

  52. Online Document 52

    4.10.2.6 Kinetic (and equilibrium) parameters from relaxation measurements

    D. Porschke

  53. Online Document 53

    4.10.2.7 Effects of amino acid and peptide ligands on the cooperative helix-coil transition of polynucleotides

    D. Porschke

  54. Online Document 54

    4.10.2.8 Model complexes formed with polypeptides

    D. Porschke

  55. Online Document 55

    4.10.2.9 Miscellaneous

    D. Porschke

  56. Online Document 56

    4.10.3 References for 4.10

    D. Porschke

  57. Online Document 57

    4.11.1 Introduction

    K. L. Wierzchowski

  58. Online Document 58

    Physical Data II. Theoretical Investigations · 4.11.2 Data

    K. L. Wierzchowski

  59. Online Document 59

    4.11.3 References for 4.11

    K. L. Wierzchowski

  60. Online Document 60

    4.12.1 Introduction

    D. Shugar, A. Psoda

  61. Online Document 61

    4.12.2 Predominant tautomeric species of nucleic acid components

    D. Shugar, A. Psoda

  62. Online Document 62

    4.12.3.1 Minor tautomeric species of neutral forms of purines, pyrimidines, some analogues and nucleosides

    D. Shugar, A. Psoda

  63. Online Document 63

    4.12.3.2 Prototropic tautomerism in the imidazole ring of common purines

    D. Shugar, A. Psoda

  64. Online Document 64

    4.12.3.3 Monocationic forms (protonation sites) of purines and pyrimidines

    D. Shugar, A. Psoda

  65. Online Document 65

    4.12.3.4 Protonation sites in the cationic forms of the purine and pyrimidine bases of nucleosides

    D. Shugar, A. Psoda

  66. Online Document 66

    4.12.3.5 Protonation sites of purines and pyrimidines involved in various types of base pairing in different systems

    D. Shugar, A. Psoda

  67. Online Document 67

    4.12.3.6 Monoanionic species of purines and purine nucleosides

    D. Shugar, A. Psoda

  68. Online Document 68

    4.12.3.7 Monoanions of 2,4-diketopyrimidines

    D. Shugar, A. Psoda

  69. Online Document 69

    4.12.3.9 Neutral forms of 2(4)-monooxopyrimidines

    D. Shugar, A. Psoda

  70. Online Document 70

    4.12.3.10 Reduced pyrimidines (metabolic intermediates) and their nucleosides

    D. Shugar, A. Psoda

  71. Online Document 71

    4.12.3.11 Barbituric acids and barbitals

    D. Shugar, A. Psoda

  72. Online Document 72

    4.12.3.12 Isocytosines

    D. Shugar, A. Psoda

  73. Online Document 73

    4.12.3.13 Isoguanine and isoguanosines

    D. Shugar, A. Psoda

  74. Online Document 74

    4.12.3.14 Promutagenic analogues of cytosine

    D. Shugar, A. Psoda

  75. Online Document 75

    4.12.3.15 Promutagenic analogues of adenosine

    D. Shugar, A. Psoda

  76. Online Document 76

    4.12.3.16 4-Aminopyrazolo (3,4-d)pyrimidine

    D. Shugar, A. Psoda

  77. Online Document 77

    4.12.3.17 Pyrazolo(4,3-d)pyrimidines and their nucleosides

    D. Shugar, A. Psoda

  78. Online Document 78

    4.12.4 References for 4.12

    D. Shugar, A. Psoda

  79. Online Document 79

    5.1.1 Introduction

    B. Pullman, R. Lavery

  80. Online Document 80

    5.1.2 Methods of calculation and representation

    B. Pullman, R. Lavery

  81. Online Document 81

    Physical Data II. Theoretical Investigations · 5.1.3 Results

    B. Pullman, R. Lavery

  82. Online Document 82

    Physical Data II. Theoretical Investigations · Tables for 5.1

    B. Pullman, R. Lavery

  83. Online Document 83

    Physical Data II. Theoretical Investigations · Figs. 1 - 23

    B. Pullman, R. Lavery

  84. Online Document 84

    Physical Data II. Theoretical Investigations · Figs. 24 - 52

    B. Pullman, R. Lavery

  85. Online Document 85

    Physical Data II. Theoretical Investigations · Figs. 53 - 72

    B. Pullman, R. Lavery

  86. Online Document 86

    5.1.4 References for 5.1

    B. Pullman, R. Lavery

  87. Online Document 87

    5.2.1 Introduction

    W. K. Olson, A. R. Srinivasan

  88. Online Document 88

    5.2.3 Nonbonded interactions

    W. K. Olson, A. R. Srinivasan

  89. Online Document 89

    5.2.4 Comparisons

    W. K. Olson, A. R. Srinivasan

  90. Online Document 90

    Physical Data II. Theoretical Investigations · 5.2.5 Discussion

    W. K. Olson, A. R. Srinivasan

  91. Online Document 91

    5.2.6.2 Van der Waals parameters of selected atom pairs in the nucleic acid chain

    W. K. Olson, A. R. Srinivasan

  92. Online Document 92

    5.2.6.3 Partial atomic charges and interaction potentials

    W. K. Olson, A. R. Srinivasan

  93. Online Document 93

    5.2.7 References for 5.2

    W. K. Olson, A. R. Srinivasan

  94. Online Document 94

    5.3.1 Introduction

    P. A. Kollman

  95. Online Document 95

    5.3.2 Molecular mechanics and dynamics theory

    P. A. Kollman

  96. Online Document 96

    5.3.3.1 Molecular mechanics

    P. A. Kollman

  97. Online Document 97

    5.3.3.2 Molecular dynamics

    P. A. Kollman

  98. Online Document 98

    5.3.4 References for 5.3

    P. A. Kollman

  99. Online Document 99

    5.4.1 Introduction

    M. Bansal, V. Sasisekharan

  100. Online Document 100

    Physical Data II. Theoretical Investigations · 5.4.2 Methods

    M. Bansal, V. Sasisekharan

  101. Online Document 101

    5.4.3 Models for A, B, C and D forms of DNA, with mononucleotide repeating units

    M. Bansal, V. Sasisekharan

  102. Online Document 102

    5.4.4 Models for DNA with dinucleotide repeating units

    M. Bansal, V. Sasisekharan

  103. Online Document 103

    Physical Data II. Theoretical Investigations · Tables

    M. Bansal, V. Sasisekharan

  104. Online Document 104

    Physical Data II. Theoretical Investigations · Figures

    M. Bansal, V. Sasisekharan

  105. Online Document 105

    5.4.6 References for 5.4

    M. Bansal, V. Sasisekharan